There are 5 676 contigs in Test_Ng, accounting for 27 808 208 bp and an average coverage 19,07 X.

Bases in scaffold: 78%.


Contigs

Contig nameSizePairs
contig00002 4157773
contig00003 3946681
contig00010 2102532
contig00013 2008921
contig00017 1782586
contig00037 1067251
contig00050 864643
contig00068 723882
contig00069 720470
contig00087 563132
contig00090 555161
contig00096 539394
contig00101 517994
contig00107 484980
contig00120 439104

Scaffolds

Scaffold nameSizeContigs
scf01592 1347231 40
scf00604 943618 10
scf01276 796145 18
scf00790 730915 13
scf00669 660410 19
scf01756 655860 20
scf00027 620086 14
scf00276 583004 26
scf00022 568795 12
scf01419 548629 12
scf00493 532459 11
scf00586 512947 27
scf00511 512900 23
scf00045 447980 6
scf01716 388884 21
scf01048 377962 10
scf00719 352190 9
scf00114 345351 25
scf01314 330025 20
scf00466 328444 15
scf00695 321046 18
scf00005 319009 1
scf02147 317141 19
scf01114 252434 10
scf00340 229055 20
scf01064 229022 10
scf00166 223287 15
scf00675 215231 22
scf00058 194303 5
scf00273 180163 5

News from ScaMPI

Freshest posts in ScaMPI's blog

Fix: trap_words.pl script download November 19, 2013
The missing script “trap_words.pl” is being included in the (soon to be released) next update of the ScaMPI Package. I…

ScaMPI scaffolding algorithm tested October 03, 2013
To assess the accuracy of ScaMPI scaffolding algorithm we generated a simulated set of contigs from A. thaliana genome (~12 000 …

Estimation of Contig Correctness Checker accuracy October 01, 2013
To assess the accuracy of the correctness.pl script (that evaluates the integrity of contigs) we selected a set of 600 contigs fr…

TRAP Tutorial September 05, 2013
This tutorial explain how to use the TRAP pipeline (Telomeric Repeat Analysis Program) to spot telomeres from mate paired reads in…

Preparing alignments for ScaMPI: pairing September 03, 2013
A pivotal step to prepare data for ScaMPI is the pairing of alignments, using the pass_pair program from PASS suite. Once that we …